Molecular characterization of bovine noroviruses and neboviruses in Turkey: detection of recombinant strains
ARCHIVES OF VIROLOGY, cilt.164, sa.5, ss.1411-1417, 2019 (SCI-Expanded, Scopus)
- Yayın Türü: Makale / Tam Makale
- Cilt numarası: 164 Sayı: 5
- Basım Tarihi: 2019
- Doi Numarası: 10.1007/s00705-019-04186-0
- Dergi Adı: ARCHIVES OF VIROLOGY
- Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus
- Sayfa Sayıları: ss.1411-1417
- Açık Arşiv Koleksiyonu: AVESİS Açık Erişim Koleksiyonu
- Ankara Üniversitesi Adresli: Evet
Özet
To investigate the molecular epidemiology and genetic diversity of bovine enteric caliciviruses, a total of 167 fecal samples from diarrheic calves were screened. Bovine noroviruses (BoNoVs) and neboviruses were detected in 56 (33.5%) and 37 (22.1%) fecal samples, respectively. Sequences of the RdRp and capsid gene of selected BoNoVs showed that the GIII.1 and GIII. 2 genotypes were in circulation in Turkey. Two of the BoNoV strains were identified as recombinant strains (GIII. P1/GIII.2). All examined neboviruses possessed a Nebraska-like RdRp gene. The two nebovirus strains were classified into lineage 4 based on phylogenetic analysis of VP1 amino acid sequences. One of them showed evidence of a recombination event within the S domain. This study is thus the first to reveal the presence of the BoNoV GIII. 1 genotype and recombinant strains of BoNoV and neboviruses in Turkey.