Cloning of a xylanase gene xyn2A from rumen fungus Neocallimastix sp GMLF2 in Escherichia coli and its partial characterization

Akyol İ., Comlekcioglu U., Kar B., Ekinci M. S., Ozkose E.

BIOLOGIA, cilt.64, sa.4, ss.664-670, 2009 (SCI-Expanded) identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 64 Sayı: 4
  • Basım Tarihi: 2009
  • Doi Numarası: 10.2478/s11756-009-0140-5
  • Dergi Adı: BIOLOGIA
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus
  • Sayfa Sayıları: ss.664-670
  • Anahtar Kelimeler: Neocallimastigaceae, Neocallimastix, xylanase, gene expression, rumen, E. coli, ANAEROBIC FUNGI, PATRICIARUM, CELLULOSE, DOMAINS, FAMILY, DNA
  • Ankara Üniversitesi Adresli: Hayır

Özet

Anaerobic fungi belonging to the family Neocallimastigaceae are native inhabitants in the rumen of the most herbivores, such as cattle, sheep and goats. A member of this unique group, Neocallimastix sp. GMLF2 was isolated from cattle feces and screened for its xylanase encoding gene using polymerase chain reaction. The gene coding for a xylanase (xyn2A) was cloned in Escherichia coli and expression was monitored. To determine the enzyme activity, assays were conducted for both fungal xylanase and cloned xylanase (Xyl2A) for supernatant and cell-associated activities. Optimum pH and temperature of the enzyme were found to be 6.5 and 50A degrees C, respectively. The enzyme was stable at 40A degrees C and 50A degrees C for 20 min but lost most of its activity when temperature reached 60A degrees C for 5-min incubation time. Rumen fungal xylanase was mainly released to the supernatant of culture, while cloned xylanase activity was found as cell-associated. Multiple alignment of the amino acid sequences of Xyl2A with published xylanases from various organisms suggested that Xyl2A belongs to glycoside hydrolase family 11.